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2'-Deoxycytidine 5'-monophosphate

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Identification
Molecular formula
C9H14N3O7P
CAS number
653-63-4
IUPAC name
[5-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-tetrahydrofuran-2-yl]methyl dihydrogen phosphate
State
State

At room temperature, 2'-Deoxycytidine 5'-monophosphate is typically in a solid state, specifically as a powder or crystalline solid. It is stable under normal conditions and should be stored in a cool, dry place to maintain its integrity. The compound is not volatile, making it suitable for various biochemical applications without significant decomposition or evaporation.

Melting point (Celsius)
0.00
Melting point (Kelvin)
0.00
Boiling point (Celsius)
0.00
Boiling point (Kelvin)
0.00
General information
Molecular weight
307.20g/mol
Molar mass
307.1990g/mol
Density
1.8000g/cm3
Appearence

The compound typically appears as a white to off-white powder, which is consistent with many nucleotide monophosphates. In some cases, it may also appear in crystalline form. The powder form is usually dry and free-flowing.

Comment on solubility

Solubility of [5-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-tetrahydrofuran-2-yl]methyl dihydrogen phosphate

The solubility of the compound C9H14N3O7P, also known as [5-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-tetrahydrofuran-2-yl]methyl dihydrogen phosphate, can be an intriguing aspect to explore due to its unique structural features. Here are some key insights regarding its solubility:

  • Polarity: The presence of phosphate groups tends to enhance the polarity of the molecule, making it more soluble in polar solvents such as water.
  • Hydrogen Bonding: The functional groups, including the amino and hydroxy groups, are capable of forming hydrogen bonds, which can further increase its solubility in aqueous environments.
  • pH Sensitivity: The solubility can vary with pH. This compound may be more soluble in acidic or neutral conditions compared to basic ones due to the protonation states of the functional groups.
  • Temperature Effects: As with many compounds, increased temperature may lead to enhanced solubility as molecular motion increases.

In conclusion, the solubility of [5-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-tetrahydrofuran-2-yl]methyl dihydrogen phosphate is likely favorable in polar solvents and sensitive to environmental conditions. Understanding the nuances of its solubility can be pivotal in applications involving this compound.

Interesting facts

Interesting Facts about [5-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-tetrahydrofuran-2-yl]methyl dihydrogen phosphate

This compound is a fascinating example of a phosphoric acid derivative, showcasing a unique combination of biochemical functionalities and structural complexity. Here are a few interesting aspects about it:

  • Biological Relevance: This compound can be considered as a modified nucleotide analog, which plays a crucial role in cellular processes, including DNA synthesis and cellular signaling.
  • Pharmacological Potential: Due to its structural similarity to vital metabolites, it could exhibit potential as a pharmaceutical agent. Such compounds can interact with biological pathways, potentially leading to therapeutic developments for diseases.
  • Synthetic Pathways: The synthesis of this compound may involve both organic synthesis techniques and phosphoramidation methods, making it a superb subject for students interested in synthetic chemistry.
  • Structure-Activity Relationship: Understanding how small changes in the structural framework affect biological activity can provide insights into drug design. This compound's unique heterocycles could lead to significant variations in activity.
  • Analytical Techniques: Characterizing this compound often involves advanced techniques such as NMR (Nuclear Magnetic Resonance) spectroscopy, mass spectrometry, and chromatography. Mastery of these techniques is essential for any aspiring chemist.

As you delve deeper into the world of chemistry, exploring compounds like this one broadens your understanding of biological systems and opens up possibilities for innovative discoveries.

Synonyms
Cytidine 5'-(dihydrogen phosphate)
[5-(4-amino-2-oxopyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methyl dihydrogen phosphate
(5-(4-amino-2-oxopyrimidin-1-yl)-3-hydroxyoxolan-2-yl)methyl dihydrogen phosphate
SCHEMBL12940502
DTXSID70862516
CHEBI:181630
AKOS015998311
[5-(4-amino-2-oxohydropyrimidinyl)-3-hydroxyoxolan-2-yl]methyl dihydrogen phos phate
DB-040435
NS00014660
4-Amino-1-(2-deoxy-5-O-phosphonopentofuranosyl)pyrimidin-2(1H)-one
[5-(4-amino-2-oxopyrimidin-1(2H)-yl)-3-hydroxytetrahydrofuran-2-yl]methyl dihydrogen phosphate